vignettes/itp-vignette.Rmd
itp-vignette.Rmd
The Interpolate, Truncate, Project (ITP) root-finding algorithm was developed in Oliveira and Takahashi (2020). It’s performance compares favourably with existing methods on both well-behaved functions and ill-behaved functions while retaining the worst-case reliability of the bisection method. For details see the authors’ Kudos summary and the Wikipedia article ITP method.
The itp
function implements the ITP method to find a
root \(x^*\) of the function \(f: \mathbb{R} \rightarrow \mathbb{R}\) in
the interval \([a, b]\), where \(f(a)f(b) < 0\). If \(f\) is continuous over \([a, b]\) then \(f(x^*) = 0\). If \(f\) is discontinuous over \([a, b]\) then \(x^*\) may be an estimate of a point of
discontinuity at which the sign of \(f\) changes, that is, \(f(x^* - \delta)f(x^* + \delta) \leq 0\),
where \(0 \leq \delta \leq \epsilon\)
for some tolerance value \(\epsilon\).
We use some of the examples presented in Table 1 of Oliveira and Takahashi (2020) to illustrate the
use of this function and run the examples using the uniroot
function in the stats
package as a means of comparison,
using a convergence tolerance of \(10^{-10}\) in both cases. The
itp
function uses the following default values of the
tuning parameters: \(\kappa_1 = 0.2 / (b -
a)\), \(\kappa_2 = 2\) and \(n_0 = 1\), but these may be changed by the
user. See Sections 2 and 3 of Oliveira and
Takahashi (2020) for information. The following function prints
output from uniroot
in the same style as the output from
itp
.
# Method to print part of uniroot output
print.list <- function(x, digits = max(3L, getOption("digits") - 3L)) {
names(x)[1:3] <- c("root", "f(root)", "iterations")
print.default(format(x[1:3], digits = digits), print.gap = 2L, quote = FALSE)
}
First, we consider supplying the argument f
to
itp
using an R function. Then we show how to supply an
external pointer to a C++ function. For the simple examples given in the
itp
package only a modest improvement in speed is observed
(and expected). However, being able to call itp()
on the
C++ side may have benefits in more challenging problems.
itp
an R function
These functions are infinitely differentiable and contain only one simple root over \([−1, 1]\).
This function has a non-simple root at \(10^{-6}\), with a multiplicity of 3.
# Polynomial 3
poly3 <- function(x) (x * 1e6 - 1) ^ 3
itp(poly3, c(-1, 1))
#> function: poly3
#> root f(root) iterations
#> 1e-06 -1.25e-13 36
This function has discontinuities, including one at the location of the root.
This function has multiple roots: we find two of them.
# Warsaw
warsaw <- function(x) ifelse(x > -1, sin(1 / (x + 1)), -1)
# Function increasing over the interval
itp(warsaw, c(-1, 1))
#> function: warsaw
#> root f(root) iterations
#> -0.6817 -5.472e-11 11
# Function decreasing over the interval
itp(warsaw, c(-0.85, -0.8))
#> function: warsaw
#> root f(root) iterations
#> -0.8408 6.494e-11 8
#> Warning in sin(1/(x + 1)): NaNs produced
In terms of a naive comparison based on the number of iterations
itp
and uniroot
perform similarly, except in
the repeated-root “Polynomial 3” example, where itp
requires fewer iterations.
itp
an external pointer to a C++
function
The general approach follows the article Passing user-supplied C++ functions in the Rcpp Gallery. The user writes a C++ function to calculate \(f\). This function must have a particular structure. As an example consider the following function, which implements the Lambert function considered above.
double lambert_cpp(const double& x, const List& pars) {
return x * exp(x) - 1.0 ;
}
The function returns a value of double type and has two arguments: the first is the main argument and is of double type and the second is a list containing the values of additional parameters whose values are not specified inside the function. This list must be present, even if an empty list will be passed to the function. This allows the user to change the values of any parameters in \(f\) without editing the function.
One way to provide C++ functions is to create them in a file, say
user_fns.cpp
. Example content is provided below.
#include <Rcpp.h>
using namespace Rcpp;
// [[Rcpp::interfaces(r, cpp)]]
// User-supplied C++ functions for f.
// The only interface is double fun(const double& x, const List& pars).
// The second (List) argument must be included even if the function has no
// additional arguments.
// Each function must be prefaced by the line: // [[Rcpp::export]]
// [[Rcpp::export]]
double lambert_cpp(const double& x, const List& pars) {
return x * exp(x) - 1.0 ;
}
// [[Rcpp::export]]
SEXP xptr_create(std::string fstr) {
typedef double (*funcPtr)(const double& x, const List& pars) ;
if (fstr == "lambert")
return(XPtr<funcPtr>(new funcPtr(&lambert_cpp))) ;
else
return(XPtr<funcPtr>(R_NilValue)) ;
}
The full file is available on the itp
Github page. The functions in this file are compiled and made
available to R, either using the Rcpp::sourceCpp
function
(e.g. Rcpp::sourceCpp("user_fns.cpp")
) or using RStudio’s
Source button on the editor toolbar. The example content below also
includes the function xptr_create
, which creates an
external pointer to a C++ function. It is this external pointer that is
passed to itp
. If the user has written a C++ function, say
new_name
, then they need to add to xptr_create
(or their own version of this function) two lines of code:
else if (fstr == "new_name")
return(Rcpp::XPtr<funcPtr>(new funcPtr(&new_name))) ;
to create an external pointer for new_name
using
create_xptr
.
We repeat the Lambert example, obtaining the same results as above when we used an R function to supply the function.
# Lambert, using an external pointer to a C++ function
lambert_ptr <- xptr_create("lambert")
res <- itp(lambert_ptr, c(-1, 1))
res
#> function: lambert_ptr
#> root f(root) iterations
#> 0.5671 2.048e-12 8
itp_c
Also provided is the function itp_c
, which is equivalent
to itp
, but the calculations are performed entirely using
C++, and the arguments differ slightly: itp_c
has a named
required argument pars
rather than ...
and it
does not have the arguments interval
, f.a
or
f.b
. This may be useful if you wish to call an ITP function
on the C++ side.
Objects of class itp
have a plot method that, by
default, produces a plot of the function over the interval over which
the root was sought and indicates the location of the root using dashed
lines.